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Um... you didn't look at the "General Properties" menu by chance, did you? It still DOES all that - at least I had no issues figuring it out after opening all the menus in the "Settings" program. There are checkboxes for ALL of those settings in there - you have to be blind, illiterate, or both to have missed all of them, at least if you were using Wisbar Advance 2 and not Wisbar Advance Desktop or something.
Themes are there to make the taskbar and buttons look different - you can choose to hide icons if you want to, but I usually leave them showing. You can reorganize the order of the buttons on the taskbar, or choose not to show some or all of them. You cannot modify the System Tray with Wisbar Advance 2: for that, you need WBA 3. You CAN show tasks at the top taskbar as running tasks, and use "hold to close" functionality.
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