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I think your current installation locations are ok. Most of my frequently run programs are in BIS without slowdown. The next things to check are:
1. Are you properly closing running programs with the Switcher bar or third party utility?
2. How often are you using MemMaid to clean out junk/temp files? This is especially important after surfing.
3. Did you move your PIE cache to BIS? This significantly slows down your system. Try moving to SD instead.
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