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I have used both programs a lot. What is nice about MightySync is that it continually syncs so that as soon as you update a file the syncronization takes place. Mobsync with sync every few minutes as you set it. Mobsync is easier to set up and use I think but you get error messages. MightySync and MobSync will syncronize individual files and folders. MightySync freaks out if your folder is empty.
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