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Definitely a unique need. I could go into details on how battery moitoring circuits work. But, that doesn't answer your question. Long story short, I doubt there's a software package that will allow you to set the charging limits. There is usually a ckt in the PDA that will limit it to 100% so the battery will not over charge. However, this is not programmable.
There are hardware devices that will discharge batteries and monitor the level. But, you normally have to remove the battery from the device.
My only suggestion would be to leave the PDA on until the charge level gets to 60%. Then, pack and ship the device. I had to do this a number of years ago when the company I worked for was setting up, loading software and shipping laptop PCs to customers.
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