Having issues with Startup

[roccobass]

My x51v freaked out a little over a week ago and quit syncing correctly; It would sync some stuff like the contacts and task list perfectly but wouldn't do the calendar at all and the files it would only do some. I restored to a backup but was still having the same syncing issues. To make a long story short after much trouble shooting and trying many different fixes I decided to do a hard reset and rebuild from the ground up. Unfortunatly I'm still seeing issues. One that I'm able to repeat, and not fix, is that after installing and setting up dogfood's RegTweak and then performing a soft reset it doesn't automatically start back up. I have to go into settings open it and close it again for the indicator bars to show themselves on the top of the screen again. When I open all the settings are correct, so I don't have to change anything but it won't start on it's own. I suspect there is a registry setting that is somehow associated with the start up process and is affecting the programs that fire up when the Ax is turned on. I don't think it's being returned to it's default setting after doing a hard reset (I've done a number of them and this behavior is consistant)
I don't think the problem is with RegTweak as one of my other start up programs acts like it only gets partially through it's start up routien too. (Launcher by Scott Seiglemen, only displays the default icons for shortcuts pointing to the CF card) I've used both these programs for years and have not seen this problem with either of them until now.
Any help would be greatly appreciated, I feel lost without my digital brain!!!! Help!

Thanks,
Roccobass